Publications

As members of many research consortium the team of AstridBio continuously publishes scientific papers, presents on conferences or cited by research partners as referenced below.

Torok Zs., Peto T., Csosz E., Tukacs E., Molnar A. M., Berta A., Tozser J., Hajdu A., Nagy V., Domokos B., Csutak A.: Combined methods for diabetic retinopathy screening, using retina photographs and tear fluid proteomics biomarkers, Journal of Diabetes Research, “Complications of Diabetes” (Special issue), Under publication.

Szalai E., Torok Zs., Modis L., Nemeth G., Berta A., Nagy A., Felszeghy E., Kaposzta R., Csutak A.: Corneal microstructural changes in young Type 1 diabetes mellitus patients, 2014, Under review.

Csutak A., Torok Zs., Csosz E., Peto T.: Latasmento uj szures, Termeszet vilaga 145(5) (2014), 210-214.

Csosz E., Csutak A., Kallo G, Torok Zs., Tozser J.: Detection of tear protein biomarkers for diabetic retinopathy screening, 13th Human Proteome Organization World Congress (HUPO 2014), Madrid, Spain, 2014.

Torok Zs.: Big data in Healthcare, Hungarian Society of Personalized Medicine, 5th Annual Congress, Velence, Hungary, 6-7 August, 2014.

Tukacs E., Torok Zs.: Collaboration based biobank system for supporting biomarker research, Cardiovascular interdisciplinary research at the DE OEC, Debrecen, Hungary, 2013.

Torok Zs., Peto T., Csosz E., Tukacs E., Marta Molnar A., Maros-Szabo Zs., Berta A., Tozser J., Hajdu A., Nagy V., Domokos B., Csutak A.: Tear fluid proteomics multimarkers for diabetic retinopathy screening, BMC Ophthalmology 13(1):40 (2013)

Csutak A., Torok Zs., Peto T., Csosz E., Marta Molnar A., Tozser J., Hajdu A.: Tear fluid proteomics multimarkers for diabetic retinopathy screening, 23rd Eye Complications Study Group Meeting (EASDec 2013), Barcelona, Spain, 2013.

Czimmerer Zs., Hulvely J., Simandi Z., Varallyay E., Szabo E., Balogh M., Horvath A., Varga A., Dezso B., Domokos B., Havelda Z., Torok Zs., Nagy L., Balint B. L.: A Versatile Method to Design Stem-Loop Primer-Based Quantitative PCR Assays for Detecting Small Regulatory RNA Molecules, PLoS ONE 8(1) (2013), e55168.

Torok Zs.: Network based biobanking for biomarker discovery, ESBB’s 2013 Annual Conference, Verona, Italy, 8-11 October, 2013.

Torok Zs.: Bioinformatics trends in the field of biomarker discovery, Hungarian Society of Personalized Medicine, 4th Annual Congress, Eger, Hungary, 6-7 September, 2013.

Tukacs E., Korotij A., Maros-Szabo Zs., Marta-Molnar A., Hajdu A., Torok Zs.: Model requirements for Biobank Software Systems, Bioinformation 8(6) (2012), 290-292.

Csosz E., Boross P., Csutak A., Berta A., Toth F., Poliska Sz., Torok Zs.,  Tozser J.: Quantitative analysis of proteins in the tear fluid of patients with diabetic retinopathy, Journal of Proteomics 75(7) (2012), 2196-2204.

Antal B., Hajdu A., Szabo-Maros Zs., Torok Zs.,  Csutak A., Peto T.: A Two-phase Decision Support Framework for the Automatic Screening of Digital Fundus Images, Journal of Computational Science (Elsevier) 3(5) (2012), 262-268.

Antal B., Hajdu A.: An Ensemble-based System for Microaneurysm Detection and Diabetic Retinopathy Grading, IEEE Trans. on Biomedical Engineering 59(6) (2012), 1720-1726.

Laczik M., Tukacs E., Uzonyi B., Domokos B., Doma Zs., Kiss M., Horvath A., Batta Z., Maros-Szabo Zs., Torok Zs.: GenoViewer, a SAM/BAM viewer tool, Bioinformation 8(2) (2012), 107-109.

Gor B., Balla A., Tukacs E., Nagy I., Torok Zs.: A novel high accuracy algorithm for reference assembly in colour space, International Journal of Biometrics and Bioinformatics (IJBB) 6 (4) (2012), 92-104.

Qureshi R. S., Kovacs L., Harangi B., Nagy B., Peto T., Hajdu A.: Combining algorithms for automatic detection of optic disc and macula in fundus images, Computer Vision and Image Understanding (CVIU) 116 (2012), 138–145.

Antal B., Hajdu A.: Improving microaneurysm detection using an optimally selected subset of candidate extractors and preprocessing methods, Pattern Recognition 45 (2012), 255-261.

Torok Zs.: Bioinformatics supported research strategies, Hungarian Society of Personalized Medicine, 2nd Annual Congress, Eger, Hungary, 23-24 September, 2011.

Antal B., Hajdu A.: A stochastic approach to improve macula detection in retinal images, Acta Cybernetica 20 (2011), 5-15.

Antal B., Lazar I., Hajdu A.: An Ensemble Approach to Improve Microaneurysm Candidate Extraction, ICETE 2010, Obaidat M. S., Tsihrintzis, George A., Filipe, Joaquim (Eds.), Communications in Computer and Information Science, Vol. 222, Springer Verlag, pp. 378-394, Heidelberg, 2011.

Csutak A., Antal B., Lazar I., Peto T., Torok Zs., Biro A., Hajdu A.: Diabetic retinopathy screening with computational support, European Association for Vision and Eye Research Congress (EVER 2011), Crete, Greece, 2011.

Harangi B., Csordas T., Hajdu A.: Detecting the excessive activation of the ciliaris muscle on thermal images, IEEE 9th International Symposium on Applied Machine Intelligence and Informatics (SAMI 2011), Smolenice, Slovakia, 2011.

Liu L., Okada S., Kong XF., Kreins AZ. et al.: Gain-of-function human STAT1 mutations impair IL-17 immunity and underlie chronic mucocutaneous candidiasis, The Journal of Experimental Medicine 208(8) (2011),1635-1648. publication citing Astridbio

Toman H., Kovacs L., Jonas A., Hajdu L., Hajdu A.: A generalization of majority voting scheme for medical image detectors, Lecture Notes in Artificial Intelligence 6679(2) (2011), 189-196.

Kovacs Gy., Hajdu A.: Extraction of vascular system in retina images using averaged one-dependence estimators and orientation estimation in Hidden Markov Random Fields, IEEE 8th International Symposium on Biomedical Imaging (ISBI2011), Chicago, USA, 2011.

Lazar I., Hajdu A.: Microaneurysm detection in retinal images using a rotating cross-section based model, IEEE 8th International Symposium on Biomedical Imaging (ISBI2011), Chicago, USA, 2011.

Antal B., Lazar I., Hajdu A.: Microaneurysm detection using a complex system, 9th Conference of the Hungarian Association for Image Processing and Pattern Recognition (KEPAF 2011), Szeged, Hungary, 2011.

Kovacs L., Harangi B., Nagy B., Qureshi R. J., Hajdu A.: Graph based detection of optic disc and fovea in retinal images, 9th Conference of the Hungarian Association for Image Processing and Pattern Recognition (KEPAF 2011), Szeged, Hungary, 2011.

Antal B., Hajdu A.: An Ensemble-Based Microaneurysm Detector for Retinal Images, 18th IEEE International Conference on Image Processing (ICIP2011), Brussels, Belgium, 2011.

Antal B., Lazar I., Hajdu A., Torok Zs., Csutak A., Peto T.: Evaluation of the grading performance of an ensemble-based microaneurysm detector, 33rd Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC2011), Boston, USA, 2011.

Nagy B., Harangi B., Antal B., Hajdu A.: Ensemble-based exudate detection in color fundus images, 7th International Symposium on Image and Signal Processing and Analysis (ISPA2011), Dubrovnik, Croatia, 2011.

Kovacs Gy., Fazekas A., Hajdu A.: Exponential contrast maximization of intensity images, 7th International Symposium on Image and Signal Processing and Analysis (ISPA2011), Dubrovnik, Croatia, 2011.

Torok Zs.: Bioinfromatics in personalized medicine, Hungarian Society of Personalized Medicine, 1st Annual Congress, Budapest, Hungary, 28 Oktober, 2010.

Szeghalmy Sz., Toman H., Hajdu A.: Detecting digital intersections using line approximation, 8th International Conference on Applied Informatics (ICAI2010), Eger, Hungary, 2010.

Antal B., Lazar I., Hajdu A.: Novel approaches to improve microaneurysm detection in retinal images, 8th International Conference on Applied Informatics (ICAI2010), Eger, Hungary, 2010.

Lazar I., Hajdu A.: Retinal microaneurysm detection based on intensity profile analysis, 8th International Conference on Applied Informatics (ICAI2010), Eger, Hungary, 2010.

Qureshi R. J., Kovacs L., Nagy B., Harangi B., Hajdu A.: Automatic detection of the fovea and optic disk in digital retinal images by combining algorithms, 8th International Conference on Applied Informatics (ICAI2010), Eger, Hungary, 2010.

Lazar I., Qureshi R. J., Hajdu A.: A novel approach for the automatic detection of microaneurysms in retinal images, 6th IEEE International Conference on Emerging Technologies (ICET), Islamabad, Pakistan, 2010.

Qureshi R. J., Kovacs L., Nagy B., Harangi B., Hajdu A.: Graph based detection of optic disc and fovea in retinal images, 4th IEEE International Workshop on Soft Computing Applications, Arad, Romania, 2010.

Antal B., Lazar I., Hajdu A., Torok Zs., Csutak A., Peto T.: A multi-level ensemble-based system for detecting microaneurysms in fundus images, 4th IEEE International Workshop on Soft Computing Applications, Arad, Romania, 2010.

Antal B., Hajdu A.: Improving microaneurysm detection in color fundus images by using an optimal combination of preprocessing methods and candidate extractors, 18th European Signal Processing Conference (EUSIPCO 2010), Aalborg, Denmark, 2010.

Antal B., Csutak A., Peto T., Hajdu A.: A two-phase pre-filtering approach to the automatic screening of digital fundus images, 5th International Conference on Signal Processing and Multimedia Applications (SIGMAP 2010), Athens, Greece, 2010.

Antal B., Lazar I., Hajdu A.: An optimal voting scheme for microaneurysm candidate extractors using simulated annelaing, 5th International Conference on Signal Processing and Multimedia Applications (SIGMAP 2010), Athens, Greece, 2010.

Harangi B., Qureshi R. J., Csutak A., Peto T., Hajdu A.: Automatic detection of the optic disc using majority voting in a collection of optic disc detectors, IEEE 7th International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, 2010.

Csosz E., Csutak A., Peto T., Hajdu A.: Well-fitting curve models with few parameters for vascular systems on retinal images, Fifth Hungarian Conference on Computer Graphics and Geometry, Budapest, Hungary, 2010.

Toman H., Hajdu A., Szakacs J., Hornyik D., Csutak A., Peto T.: Thickness-based binary morphological improvement of distorted digital line intersections, Fifth Hungarian Conference on Computer Graphics and Geometry, Budapest, Hungary, 2010.

Harangi B., Qureshi R. J., Csutak A., Peto T., Hajdu A.: Automatic detection of the optic disc using majority voting in a collection of optic disc detectors, 7th IEEE International Symposium on Biomedical Imaging (ISBI 2010), Rotterdam, The Netherlands, 2010.

Antal B., Csutak A., Peto T., Hajdu A.: A two-phase pre-filtering approach to the automatic screening of digital fundus images, 5th International Conference on Signal Processing and Multimedia Applications (SIGMAP 2010), Athens, Greece, 2010.

Antal B., Lazar I., Hajdu A.: An optimal voting scheme for microaneurysm candidate extractors using simulated annelaing, 5th International Conference on Signal Processing and Multimedia Applications (SIGMAP 2010), Athens, Greece, 2010.

Antal B., Hajdu A.: Improving microaneurysm detection in color fundus images by using an optimal combination of preprocessing methods and candidate extractors, 18th European Signal Processing Conference (EUSIPCO 2010), Aalborg, Denmark, 2010.

Kovacs L., Qureshi R. J., Nagy B., Harangi B., Hajdu A.: Graph based detection of optic disc and fovea in retinal images, 4th IEEE International Workshop on Soft Computing Applications, Arad, Romania, 2010.

Antal B., Lazar I., Hajdu A., Torok Zs., Csutak A., Peto T.: A multi-level ensemble-based system for detecting microaneurysms in fundus images, 4th IEEE International Workshop on Soft Computing Applications, Arad, Romania, 2010.

Inczedy-Farkas G., Benkovits J., Balogh N., Almos P., Scholtz B., Zahuczky G., Torok Zs., Nagy K., Rethelyi J., Makkos Z., Kassai-Farkas A., Egerhazy A., Tuzko J., Janka Z., Bitter I., Nemeth Gy., Nagy L., Molnar M. J.: SchizoBank – The Hungarian national schizophrenia biobank and its role in schizophrenia research, Clinical Medicine 151(31) (2010), 1403-1408.

Turi A., Kupai T., Maroti G., Nagy I., Gor B., Uzonyi B., Domokos B., Torok Zs.: High-throughput sequencing approach provides insight into a novel route to new biofuel bioreactors, 14th International Biotechnology Symposium and Exhibition Biotechnology for the Sustainability of Human Society, Rimini, Italy, 14-18 September, 2010.

Torok Zs., Hajdu A.: Image processing support in the early detection of melanoma malignum, 8th International Conference on Applied Informatics, Eger, Hungary, 27–30 January, 2010.

Gor B., Balla A., Tukacs E., Laczik M., Nagy I., Torok Zs.: Reference assembly in colour space, Genome Informatics Conference, Cambridge, Hinxton, UK, September 15 – 19, 2010.

Molnar M. J., Torok Zs.: The first Hungarian national psychiatric biobank to support schizophrenia R&D, XIII. Hungarian Neuropsychopharmacology Congress, Tihany, Hungary, 7-9 October, 2010.

Tukacs E.: Bioinformatics algorithms for SOLiD, 2nd High-throughput Sequencing Workshop, Szeged, Hungary, 7-8 October, 2010.

Uzonyi B., Laczik M., Gor B., Batta Z., Doma Zs., Domokos B., Fibinger Zs. P., Harangozo R., Horvath A., Hulvely J., Kiss M., Nagy O., Nyisalovits A., Szunai J., Tukacs E., Turi A., Turk O., Torok Zs.: GenoViewer: the feature rich next generation sequencing assembly viewer/browser, Next-Generation Sequencing Data Management Conference, Providence, USA, 27-29 September, 2010.

Harangozo R., Veres P., Hajdu A.: Subsampling strategies to improve learning-based retina vessel segmentation, IEEE 16th International Conference on Image Processing (ICIP2009), Cairo, Egypt, 7-11 November, 2009.

Hajdu A., Peto T., Csutak A., Torok Zs., Harangozo R., Hulvely J., Biro A.: Extracting metadata from fundus images for the screening of diabetic retinopathy, WISP2009, 6th IEEE International Symposium on Intelligent Signal Processing, Budapest, Hungary, 2009.

Antal B., Hajdu A.: A prefiltering approach for an automatic screening system, WISP2009, 6th IEEE International Symposium on Intelligent Signal Processing, Budapest, Hungary, 2009.

Hajdu A., Veres P., Tanacs A., Harangozo R.: Object subsampling strategies to improve computational performance, ISPA2009, 6th International Symposium on Image and Signal Processing and Analysis, Salzburg, Austria, 2009.

Hajdu A., Veres P., Pitas I.: Model-based subsampling: Theory, 7th Conference of the Hungarian Association for Image Processing and Pattern Recognition (KEPAF 2009), Budapest, Hungary, 28-30 January, 2009.

Hajdu A., Veres P., Tanacs A., Peto T., Harangozo R., Hulvely J., Torok Zs., Biro A., Csutak A.: Model-based subsampling: Applications, 7th Conference of the Hungarian Association for Image Processing and Pattern Recognition (KEPAF 2009), Budapest, Hungary, 28-30 January, 2009.

Torok Zs., Nagy K.: SchizoBank to support R&D in neuroscience in Hungary, VIII. Congress of Hungarian Clinical Neurogenetic Society, Visegrad, Hungary, 4 December, 2009.

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